Serialized Form

Package biosim.app.antknn

Class biosim.app.antknn.AddSensorsBTF extends java.lang.Object implements Serializable

Class biosim.app.antknn.ConvertBTF extends java.lang.Object implements Serializable

Package biosim.app.btfreplay

Class biosim.app.btfreplay.ReplayPortrayal extends FishPortrayal implements Serializable

Package biosim.app.domworld

Class biosim.app.domworld.StateMachinePortrayal extends BasicBodyPortrayal implements Serializable

Package biosim.app.fishknn

Class biosim.app.fishknn.FishKNNLogger extends BTFLogger implements Serializable

Serialized Fields

wallout

java.io.BufferedWriter wallout

wallboolout

java.io.BufferedWriter wallboolout

zoneout

java.io.BufferedWriter zoneout

zoneboolout

java.io.BufferedWriter zoneboolout

desiredout

java.io.BufferedWriter desiredout

desiredboolout

java.io.BufferedWriter desiredboolout

Class biosim.app.fishknn.FishPortrayal extends sim.portrayal.simple.OvalPortrayal2D implements Serializable

Serialized Fields

sim

Simulation sim

body

Body body

Package biosim.app.learnedants

Class biosim.app.learnedants.BTFStatistics extends java.lang.Object implements Serializable

Class biosim.app.learnedants.OutputParser extends java.lang.Object implements Serializable

Class biosim.app.learnedants.TestBIOHMM extends java.lang.Object implements Serializable

Class biosim.app.learnedants.TestGen extends java.lang.Object implements Serializable

Package biosim.app.tutorial

Class biosim.app.tutorial.AvoidAntLogger extends BTFLogger implements Serializable

Serialized Fields

wallout

java.io.BufferedWriter wallout

wallboolout

java.io.BufferedWriter wallboolout

antout

java.io.BufferedWriter antout

antboolout

java.io.BufferedWriter antboolout

desiredout

java.io.BufferedWriter desiredout

desiredboolout

java.io.BufferedWriter desiredboolout

prevout

java.io.BufferedWriter prevout

prevboolout

java.io.BufferedWriter prevboolout

homeout

java.io.BufferedWriter homeout

Package biosim.app.twostateants

Class biosim.app.twostateants.FoodPortrayal extends sim.portrayal.simple.OvalPortrayal2D implements Serializable

Serialized Fields

sim

Simulation sim

body

Body body

Class biosim.app.twostateants.TwoStateLogger extends java.lang.Object implements Serializable

Serialized Fields

ximgout

java.io.BufferedWriter ximgout

yimgout

java.io.BufferedWriter yimgout

timgout

java.io.BufferedWriter timgout

idout

java.io.BufferedWriter idout

timeout

java.io.BufferedWriter timeout

foodVecOut

java.io.BufferedWriter foodVecOut

nearNestOut

java.io.BufferedWriter nearNestOut

foodInGripperOut

java.io.BufferedWriter foodInGripperOut

stateout

java.io.BufferedWriter stateout

wallout

java.io.BufferedWriter wallout

wallboolout

java.io.BufferedWriter wallboolout

antout

java.io.BufferedWriter antout

antboolout

java.io.BufferedWriter antboolout

desiredout

java.io.BufferedWriter desiredout

desiredboolout

java.io.BufferedWriter desiredboolout

prevout

java.io.BufferedWriter prevout

prevboolout

java.io.BufferedWriter prevboolout

homeout

java.io.BufferedWriter homeout

parentDirectory

java.io.File parentDirectory

Package biosim.core.body

Class biosim.core.body.AbstractAnt extends Body implements Serializable

Serialized Fields

grabbing

AbstractFly grabbing

Class biosim.core.body.AbstractFish extends Body implements Serializable

Class biosim.core.body.AbstractFly extends Body implements Serializable

Serialized Fields

grabbedBy

AbstractAnt grabbedBy

yummy

boolean yummy

Class biosim.core.body.AbstractMonkey extends Body implements Serializable

Class biosim.core.body.AphaenogasterCockerelli extends AbstractAnt implements Serializable

Serialized Fields

desiredVelXYT

double[] desiredVelXYT

previousVelXYT

double[] previousVelXYT

xVel

double xVel

yVel

double yVel

tVel

double tVel

Class biosim.core.body.Body extends java.lang.Object implements Serializable

Serialized Fields

agent

Agent agent

sim

Simulation sim

notFinished

boolean notFinished

Class biosim.core.body.DrosophilaMelanogaster extends AbstractFly implements Serializable

Serialized Fields

desiredVelXYT

double[] desiredVelXYT

velXYT

double[] velXYT

Class biosim.core.body.NotemigonusCrysoleucas extends AbstractFish implements Serializable

Serialized Fields

xVel

double xVel

yVel

double yVel

tVel

double tVel

desiredVelXYT

double[] desiredVelXYT

leaderp

boolean leaderp

Class biosim.core.body.ReplayBody extends Body implements Serializable

Serialized Fields

size

double size

visible

boolean visible

track

java.util.ArrayList<E> track

lastTrackIdx

int lastTrackIdx

trackID

int trackID

Class biosim.core.body.RhesusMacaque extends AbstractMonkey implements Serializable

Serialized Fields

desiredVelXYT

double[] desiredVelXYT

text

java.lang.String text

Package biosim.core.gui.portrayals

Class biosim.core.gui.portrayals.BasicBodyPortrayal extends sim.portrayal.simple.OvalPortrayal2D implements Serializable

Serialized Fields

sim

Simulation sim

body

Body body

Class biosim.core.gui.portrayals.RectObstaclePortrayal extends sim.portrayal.SimplePortrayal2D implements Serializable

Serialized Fields

obst

RectObstacle obst

Package biosim.core.sim

Class biosim.core.sim.Simulation extends sim.engine.SimState implements Serializable

Serialized Fields

env

Environment env

field2D

sim.field.continuous.Continuous2D field2D

bodies

java.util.ArrayList<E> bodies

obstacles

java.util.ArrayList<E> obstacles

poi

java.util.ArrayList<E> poi

bodyOrientations

java.util.ArrayList<E> bodyOrientations

loggers

java.util.ArrayList<E> loggers

resolution

double resolution

toroidal

boolean toroidal

Package biosim.core.util

Class biosim.core.util.BTFLogger extends java.lang.Object implements Serializable

Serialized Fields

ximgout

java.io.BufferedWriter ximgout

yimgout

java.io.BufferedWriter yimgout

timgout

java.io.BufferedWriter timgout

idout

java.io.BufferedWriter idout

timeout

java.io.BufferedWriter timeout

parentDirectory

java.io.File parentDirectory

tmpDir

java.io.File tmpDir

tmpFilePrefix

java.lang.String tmpFilePrefix

runCtr

int runCtr

Package biosim.core.util.annwrapper

Class biosim.core.util.annwrapper.Test extends java.lang.Object implements Serializable